Installing MACS2 by Tao Liu
I was interested in identifying differential peak from ChIP-Seq data without replicates.
So, as a happy user of MACS, I wanted to use MACS2.
Tips:
1) Install numpy
2) Install Cython (this would remove Prob.c error)
3) In "setup_w_cython.py" script - change -Ofast to -O3 to make sure GCC is not offended.
It should compile smooth.
Here is how to run MACS2
https://github.com/taoliu/MACS/wiki/Call-differential-binding-events
Will update on result quality.
I was interested in identifying differential peak from ChIP-Seq data without replicates.
So, as a happy user of MACS, I wanted to use MACS2.
Tips:
1) Install numpy
2) Install Cython (this would remove Prob.c error)
3) In "setup_w_cython.py" script - change -Ofast to -O3 to make sure GCC is not offended.
It should compile smooth.
Here is how to run MACS2
https://github.com/taoliu/MACS/wiki/Call-differential-binding-events
Will update on result quality.
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